Remove copilot env overrides and add config placeholders

BUILD.md

@@ -12,29 +12,29 @@
 cloudron build \
   --set-build-service builder.docker.due.ren \
   --build-service-token e3265de06b1d0e7bb38400539012a8433a74c2c96a17955e \
-  --set-repository andreasdueren/ente-cloudron \
-  --tag 0.1.0
+  --set-repository andreasdueren/affine-cloudron \
+  --tag 0.25.5-6
 ```
 
 ## Deployment Steps
 1. Remove any previous dev install of AFFiNE on the Cloudron (always reinstall from scratch).
 2. Install the freshly built image:
    ```bash
-   cloudron install --location ente.due.ren --image andreasdueren/ente-cloudron:0.1.0
+cloudron install --location affine.due.ren --image andreasdueren/affine-cloudron:0.25.5-6
    ```
 3. When prompted, confirm the app info and wait for Cloudron to report success (abort after ~30 seconds if installation stalls or errors to avoid hanging sessions).
-4. Visit `https://ente.due.ren` (or the chosen location) and sign in using Cloudron SSO.
+4. Visit `https://affine.due.ren` (or the chosen location) and sign in using Cloudron SSO.
 
 ## Testing Checklist
 - Open the app dashboard and ensure the landing page loads without 502/504 errors.
 - Create a workspace, add a note, upload an asset, and reload to confirm `/app/data` persistence.
-- Trigger OIDC login/logout flows to verify Cloudron SSO works (callback `/api/v1/session/callback`).
+- Trigger OIDC login/logout flows to verify Cloudron SSO works (callback `/oauth/callback`).
 - Send an invitation email to validate SMTP credentials wired from the Cloudron mail addon.
-- Inspect logs with `cloudron logs --app ente.due.ren -f` for migration output from `scripts/self-host-predeploy.js`.
+- Inspect logs with `cloudron logs --app affine.due.ren -f` for migration output from `scripts/self-host-predeploy.js`.
 
 ## Troubleshooting
 - **Migrations hang**: restart the app; migrations rerun automatically before the server starts. Check PostgreSQL reachability via `cloudron exec --app <id> -- env | grep DATABASE_URL`.
-- **Login issues**: confirm the Cloudron OIDC client is enabled for the app and that the callback URL `/api/v1/session/callback` is allowed.
+- **Login issues**: confirm the Cloudron OIDC client is enabled for the app and that the callback URL `/oauth/callback` is allowed.
 - **Email failures**: verify the Cloudron sendmail addon is provisioned and that `MAILER_*` env vars show up inside the container (`cloudron exec --app <id> -- env | grep MAILER`).
 - **Large uploads rejected**: adjust `client_max_body_size` in `nginx.conf` if you routinely exceed 200 MB assets, then rebuild.
 
@@ -42,3 +42,4 @@ cloudron build \
 - Persistent config lives in `/app/data/config/config.json`. Modify values (e.g., Stripe, throttling) and restart the app; the file is backed up by Cloudron.
 - Uploaded files live in `/app/data/storage` and map to `~/.affine/storage` inside the runtime.
 - Default health check hits `/api/healthz`; customize via `CloudronManifest.json` if upstream changes.
+- Copilot API keys live in `/app/data/config/config.json`. The default file contains placeholders (`sk-provide-openai-key-here`, etc.); open it in the Cloudron File Manager or via `cloudron exec` to paste your own values, then restart the app so AFFiNE picks up the changes.

CloudronManifest.json

@@ -5,21 +5,24 @@
   "description": "Next-gen knowledge base that blends docs, whiteboards, and databases for self-hosted teams.",
   "website": "https://affine.pro",
   "contactEmail": "support@affine.pro",
-  "version": "0.1.6",
-  "changelog": "Initial Cloudron packaging",
+  "version": "0.25.5-6",
+  "upstreamVersion": "0.25.5",
+  "changelog": "Configure copilot via config.json placeholders; env overrides removed",
+  "icon": "file://icon.png",
   "manifestVersion": 2,
   "minBoxVersion": "7.0.0",
   "httpPort": 3000,
+  "configurePath": "/admin",
+  "optionalSso": true,
   "addons": {
     "localstorage": {},
     "postgresql": {},
     "redis": {},
     "sendmail": {},
     "oidc": {
-      "redirectUris": [
-        "/api/v1/session/callback"
-      ],
-      "loginRedirectUri": "/api/v1/session/callback"
+      "loginRedirectUri": "/oauth/callback",
+      "logoutRedirectUri": "/",
+      "tokenSignatureAlgorithm": "RS256"
     }
   },
   "memoryLimit": 2147483648,

Dockerfile

@@ -1,4 +1,5 @@
-FROM ghcr.io/toeverything/affine:stable AS upstream
+ARG AFFINE_VERSION=0.25.5
+FROM ghcr.io/toeverything/affine:${AFFINE_VERSION} AS upstream
 
 FROM cloudron/base:5.0.0
 
@@ -13,9 +14,21 @@ ENV APP_CODE_DIR=/app/code \
 
 RUN mkdir -p "$APP_CODE_DIR" "$APP_DATA_DIR" "$APP_RUNTIME_DIR" "$APP_TMP_DIR" && \
     apt-get update && \
-    apt-get install -y --no-install-recommends jq python3 ca-certificates curl openssl libjemalloc2 && \
+    apt-get install -y --no-install-recommends jq python3 ca-certificates curl openssl libjemalloc2 postgresql-client mysql-client && \
     rm -rf /var/lib/apt/lists/*
 
+RUN curl -fsSL https://repo.manticoresearch.com/GPG-KEY-manticore > /tmp/manticore.key && \
+    curl -fsSL https://repo.manticoresearch.com/GPG-KEY-SHA256-manticore >> /tmp/manticore.key && \
+    gpg --dearmor -o /usr/share/keyrings/manticore.gpg /tmp/manticore.key && \
+    rm /tmp/manticore.key && \
+    echo "deb [signed-by=/usr/share/keyrings/manticore.gpg] https://repo.manticoresearch.com/repository/manticoresearch_jammy/ jammy main" > /etc/apt/sources.list.d/manticore.list && \
+    apt-get update && \
+    apt-get install -y --no-install-recommends manticore manticore-extra && \
+    rm -rf /var/lib/apt/lists/*
+
+RUN ln -sf /usr/share/manticore/modules/manticore-buddy/bin/manticore-buddy /usr/bin/manticore-buddy
+RUN chown -R cloudron:cloudron /usr/share/manticore
+
 # bring in the upstream runtime and packaged server artifacts
 COPY --from=upstream /usr/local /usr/local
 COPY --from=upstream /opt /opt
@@ -24,13 +37,17 @@ COPY --from=upstream /app "$APP_BUILD_DIR"
 # configuration, launch scripts, and defaults
 COPY start.sh "$APP_CODE_DIR/start.sh"
 COPY run-affine.sh "$APP_CODE_DIR/run-affine.sh"
+COPY run-manticore.sh "$APP_CODE_DIR/run-manticore.sh"
+COPY run-buddy.sh "$APP_CODE_DIR/run-buddy.sh"
 COPY nginx.conf "$APP_CODE_DIR/nginx.conf"
 COPY supervisord.conf "$APP_CODE_DIR/supervisord.conf"
 COPY config.example.json "$APP_CODE_DIR/config.example.json"
 COPY tmp_data/ "$APP_TMP_DIR/"
+COPY manticore/ "$APP_CODE_DIR/manticore/"
 
-RUN chmod +x "$APP_CODE_DIR/start.sh" "$APP_CODE_DIR/run-affine.sh" && \
-    chown -R cloudron:cloudron "$APP_CODE_DIR" "$APP_DATA_DIR" "$APP_RUNTIME_DIR" "$APP_TMP_DIR"
+RUN chmod +x "$APP_CODE_DIR/start.sh" "$APP_CODE_DIR/run-affine.sh" "$APP_CODE_DIR/run-manticore.sh" "$APP_CODE_DIR/run-buddy.sh" && \
+    chown cloudron:cloudron "$APP_CODE_DIR/start.sh" "$APP_CODE_DIR/run-affine.sh" "$APP_CODE_DIR/run-manticore.sh" "$APP_CODE_DIR/run-buddy.sh" && \
+    chown -R cloudron:cloudron "$APP_DATA_DIR" "$APP_RUNTIME_DIR" "$APP_TMP_DIR"
 
 EXPOSE 3000
 CMD ["/app/code/start.sh"]

config.example.json

@@ -2,5 +2,38 @@
   "$schema": "https://github.com/toeverything/AFFiNE/releases/latest/download/config.schema.json",
   "server": {
     "name": "AFFiNE Self Hosted Server"
+  },
+  "copilot": {
+    "enabled": true,
+    "scenarios": {
+      "override_enabled": true,
+      "scenarios": {
+        "audio_transcribing": "gemini-2.5-flash",
+        "chat": "gemini-2.5-flash",
+        "embedding": "gemini-embedding-001",
+        "image": "gpt-image-1",
+        "rerank": "gpt-4.1",
+        "coding": "claude-sonnet-4-5@20250929",
+        "complex_text_generation": "gpt-4o-2024-08-06",
+        "quick_decision_making": "gpt-5-mini",
+        "quick_text_generation": "gemini-2.5-flash",
+        "polish_and_summarize": "gemini-2.5-flash"
+      }
+    },
+    "providers.openai": {
+      "apiKey": "sk-provide-openai-key-here",
+      "baseURL": "https://api.openai.com/v1"
+    },
+    "providers.anthropic": {
+      "apiKey": "sk-ant-provide-anthropic-key-here",
+      "baseURL": "https://api.anthropic.com/v1"
+    },
+    "providers.gemini": {
+      "apiKey": "provide-gemini-key-here",
+      "baseURL": "https://generativelanguage.googleapis.com/v1beta"
+    },
+    "exa": {
+      "key": "provide-exa-key-or-leave-empty"
+    }
   }
 }

manticore/block.sql

@@ -0,0 +1,23 @@
+CREATE TABLE IF NOT EXISTS block (
+  workspace_id string attribute,
+  doc_id string attribute,
+  block_id string attribute,
+  content text,
+  flavour string attribute,
+  flavour_indexed string attribute indexed,
+  blob string attribute indexed,
+  ref_doc_id string attribute indexed,
+  ref string stored,
+  parent_flavour string attribute,
+  parent_flavour_indexed string attribute indexed,
+  parent_block_id string attribute,
+  parent_block_id_indexed string attribute indexed,
+  additional string stored,
+  markdown_preview string stored,
+  created_by_user_id string attribute,
+  updated_by_user_id string attribute,
+  created_at timestamp,
+  updated_at timestamp
+)
+charset_table = 'non_cjk, cjk'
+index_field_lengths = '1';

manticore/doc.sql

@@ -0,0 +1,13 @@
+CREATE TABLE IF NOT EXISTS doc (
+  workspace_id string attribute,
+  doc_id string attribute,
+  title text,
+  summary string stored,
+  journal string stored,
+  created_by_user_id string attribute,
+  updated_by_user_id string attribute,
+  created_at timestamp,
+  updated_at timestamp
+)
+charset_table = 'non_cjk, cjk'
+index_field_lengths = '1';

manticore/manticore.conf

@@ -0,0 +1,23 @@
+#
+# Manticore Search configuration for AFFiNE on Cloudron.
+# Keeps all runtime state under /app/data so backups include the indexer data.
+#
+
+common {
+    plugin_dir = /app/data/manticore/plugins
+}
+
+searchd {
+    listen = 127.0.0.1:9306:mysql41
+    listen = 127.0.0.1:9308:http
+    listen = 127.0.0.1:9312
+    listen = /run/manticore/manticore.sock:mysql41
+
+    log = /app/data/manticore/logs/searchd.log
+    query_log = /app/data/manticore/logs/query.log
+    binlog_path = /app/data/manticore/binlog
+    data_dir = /app/data/manticore/data
+    pid_file = /run/manticore/searchd.pid
+    mysql_version_string = 8.0.33
+    buddy_path = /app/code/run-buddy.sh --disable-telemetry
+}

nginx.conf

@@ -17,6 +17,8 @@ http {
   client_body_temp_path /run/nginx/body;
   proxy_temp_path /run/nginx/proxy;
   fastcgi_temp_path /run/nginx/fastcgi;
+  uwsgi_temp_path /run/nginx/uwsgi;
+  scgi_temp_path /run/nginx/scgi;
 
   log_format cloudron '$remote_addr - $remote_user [$time_local] "$request" '
                       '$status $body_bytes_sent "$http_referer" '
@@ -36,7 +38,7 @@ http {
   server {
     listen 3000;
     server_name _;
-    client_max_body_size 200m;
+    client_max_body_size 600m;
 
     proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
     proxy_set_header X-Forwarded-Proto $scheme;

run-affine.sh

@@ -89,7 +89,9 @@ PY
   else
     export AFFINE_SERVER_HTTPS=false
   fi
-  export AFFINE_INDEXER_ENABLED="${AFFINE_INDEXER_ENABLED:-false}"
+  export AFFINE_INDEXER_ENABLED="${AFFINE_INDEXER_ENABLED:-true}"
+  export AFFINE_INDEXER_SEARCH_PROVIDER="${AFFINE_INDEXER_SEARCH_PROVIDER:-manticoresearch}"
+  export AFFINE_INDEXER_SEARCH_ENDPOINT="${AFFINE_INDEXER_SEARCH_ENDPOINT:-http://127.0.0.1:9308}"
 }
 
 ensure_runtime_envs() {
@@ -99,9 +101,203 @@ ensure_runtime_envs() {
   ensure_server_env
 }
 
+# Helper to parse indexer endpoint into host/port for readiness checks
+wait_for_indexer() {
+  if [ "${AFFINE_INDEXER_ENABLED:-false}" != "true" ]; then
+    return
+  fi
+  local endpoint="${AFFINE_INDEXER_SEARCH_ENDPOINT:-}"
+  if [ -z "$endpoint" ]; then
+    return
+  fi
+  log "Waiting for indexer endpoint ${endpoint}"
+  if python3 - "$endpoint" <<'PY'; then
+import socket
+import sys
+import time
+from urllib.parse import urlparse
+
+endpoint = sys.argv[1]
+if not endpoint.startswith(('http://', 'https://')):
+    endpoint = 'http://' + endpoint
+parsed = urlparse(endpoint)
+host = parsed.hostname
+port = parsed.port or (443 if parsed.scheme == 'https' else 80)
+if not host or not port:
+    sys.exit(1)
+
+for _ in range(60):
+    try:
+        with socket.create_connection((host, port), timeout=2):
+            sys.exit(0)
+    except OSError:
+        time.sleep(1)
+sys.exit(1)
+PY
+    log "Indexer is ready"
+  else
+    log "Indexer at ${endpoint} not reachable after waiting, continuing startup"
+  fi
+}
+
+seed_manticore_tables() {
+  local sql_dir="${APP_CODE_DIR:-/app/code}/manticore"
+  if [ ! -d "$sql_dir" ]; then
+    log "Manticore SQL directory ${sql_dir} missing; skipping table seed"
+    return
+  fi
+  if ! command -v mysql >/dev/null 2>&1; then
+    log "mysql client not found; cannot seed Manticore tables"
+    return
+  fi
+  local mysql_cmd=(mysql -h 127.0.0.1 -P 9306)
+  for table in doc block; do
+    local sql_file="$sql_dir/${table}.sql"
+    if [ ! -f "$sql_file" ]; then
+      continue
+    fi
+    if "${mysql_cmd[@]}" < "$sql_file" >/dev/null 2>&1; then
+      log "Ensured Manticore table ${table}"
+    else
+      log "WARNING: Failed to apply ${sql_file} to Manticore"
+    fi
+  done
+}
+
+patch_upload_limits() {
+  local target="$APP_DIR/dist/main.js"
+  if [ ! -f "$target" ]; then
+    return
+  fi
+  python3 - "$target" <<'PY'
+import sys
+from pathlib import Path
+
+target = Path(sys.argv[1])
+data = target.read_text()
+updated = data
+updated = updated.replace("limit: 100 * OneMB", "limit: 512 * OneMB", 1)
+updated = updated.replace("maxFileSize: 100 * OneMB", "maxFileSize: 512 * OneMB", 1)
+if updated != data:
+    target.write_text(updated)
+PY
+}
+
+grant_team_plan_features() {
+  log "Ensuring self-hosted workspaces have team plan features"
+  node <<'NODE'
+const { PrismaClient } = require('@prisma/client');
+
+const prisma = new PrismaClient();
+
+async function main() {
+  const feature = await prisma.feature.findFirst({
+    where: { name: 'team_plan_v1' },
+    orderBy: { deprecatedVersion: 'desc' },
+  });
+  if (!feature) {
+    console.warn('[team-plan] Feature record not found, skipping');
+    return;
+  }
+
+  const workspaces = await prisma.workspace.findMany({
+    select: { id: true },
+  });
+
+  for (const { id } of workspaces) {
+    const existing = await prisma.workspaceFeature.findFirst({
+      where: {
+        workspaceId: id,
+        name: 'team_plan_v1',
+        activated: true,
+      },
+    });
+    if (existing) continue;
+
+    await prisma.workspaceFeature.create({
+      data: {
+        workspaceId: id,
+        featureId: feature.id,
+        name: 'team_plan_v1',
+        type: feature.deprecatedType ?? 1,
+        configs: feature.configs,
+        reason: 'selfhost-default',
+        activated: true,
+      },
+    });
+    console.log(`[team-plan] Granted team plan to workspace ${id}`);
+  }
+
+  await prisma.$executeRawUnsafe(`
+    CREATE OR REPLACE FUNCTION grant_team_plan_feature()
+    RETURNS TRIGGER AS $$
+    DECLARE
+      feature_id integer;
+      feature_type integer;
+      feature_configs jsonb;
+    BEGIN
+      SELECT id, type, configs
+        INTO feature_id, feature_type, feature_configs
+      FROM features
+      WHERE feature = 'team_plan_v1'
+      ORDER BY version DESC
+      LIMIT 1;
+
+      IF feature_id IS NULL THEN
+        RETURN NEW;
+      END IF;
+
+      INSERT INTO workspace_features
+        (workspace_id, feature_id, name, type, configs, reason, activated, created_at)
+      SELECT
+        NEW.id,
+        feature_id,
+        'team_plan_v1',
+        feature_type,
+        feature_configs,
+        'selfhost-default',
+        TRUE,
+        NOW()
+      WHERE NOT EXISTS (
+        SELECT 1 FROM workspace_features
+        WHERE workspace_id = NEW.id AND name = 'team_plan_v1' AND activated = TRUE
+      );
+
+      RETURN NEW;
+    END;
+    $$ LANGUAGE plpgsql;
+  `);
+
+  await prisma.$executeRawUnsafe(`
+    DO $$ BEGIN
+      CREATE TRIGGER grant_team_plan_feature_trigger
+      AFTER INSERT ON workspaces
+      FOR EACH ROW
+      EXECUTE FUNCTION grant_team_plan_feature();
+    EXCEPTION
+      WHEN duplicate_object THEN NULL;
+    END $$;
+  `);
+}
+
+main()
+  .then(() => console.log('[team-plan] Workspace quota ensured'))
+  .catch(err => {
+    console.error('[team-plan] Failed to grant features', err);
+  })
+  .finally(async () => {
+    await prisma.$disconnect();
+  });
+NODE
+}
+
 log "Running AFFiNE pre-deployment migrations"
 ensure_runtime_envs
+wait_for_indexer
+seed_manticore_tables
 node ./scripts/self-host-predeploy.js
+patch_upload_limits
+grant_team_plan_features
 
 log "Starting AFFiNE server"
 exec node ./dist/main.js

run-buddy.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+set -euo pipefail
+
+ENV_EXPORT_FILE=${ENV_EXPORT_FILE:-/run/affine/runtime.env}
+
+if [ -f "$ENV_EXPORT_FILE" ]; then
+  set -a
+  # shellcheck disable=SC1090
+  source "$ENV_EXPORT_FILE"
+  set +a
+fi
+
+exec /usr/bin/manticore-buddy "$@"

run-manticore.sh

@@ -0,0 +1,10 @@
+#!/bin/bash
+set -euo pipefail
+
+MANTICORE_CONF=${MANTICORE_CONF:-/app/data/manticore/manticore.conf}
+MANTICORE_RUN_DIR=${MANTICORE_RUN_DIR:-/run/manticore}
+
+mkdir -p "$MANTICORE_RUN_DIR"
+rm -f "$MANTICORE_RUN_DIR/searchd.pid"
+
+exec /usr/bin/searchd --nodetach -c "$MANTICORE_CONF"

start.sh

@@ -9,12 +9,24 @@ APP_BUILD_DIR=${APP_BUILD_DIR:-/app/code/affine}
 APP_HOME_DIR=${APP_HOME_DIR:-/app/data/home}
 AFFINE_HOME=${AFFINE_HOME:-$APP_HOME_DIR/.affine}
 ENV_EXPORT_FILE=${ENV_EXPORT_FILE:-$APP_RUNTIME_DIR/runtime.env}
-export APP_CODE_DIR APP_DATA_DIR APP_RUNTIME_DIR APP_TMP_DIR APP_BUILD_DIR APP_HOME_DIR AFFINE_HOME ENV_EXPORT_FILE
+MANTICORE_DATA_DIR=${MANTICORE_DATA_DIR:-$APP_DATA_DIR/manticore}
+MANTICORE_CONFIG_FILE=${MANTICORE_CONFIG_FILE:-$MANTICORE_DATA_DIR/manticore.conf}
+MANTICORE_HTTP_ENDPOINT=${MANTICORE_HTTP_ENDPOINT:-http://127.0.0.1:9308}
+export APP_CODE_DIR APP_DATA_DIR APP_RUNTIME_DIR APP_TMP_DIR APP_BUILD_DIR APP_HOME_DIR AFFINE_HOME ENV_EXPORT_FILE \
+  MANTICORE_DATA_DIR MANTICORE_CONFIG_FILE MANTICORE_HTTP_ENDPOINT
 
 log() {
   printf '[%s] %s\n' "$(date --iso-8601=seconds)" "$*"
 }
 
+record_env_var() {
+  local name="$1"
+  local value="$2"
+  if [ -n "$value" ]; then
+    printf '%s=%q\n' "$name" "$value" >> "$ENV_EXPORT_FILE"
+  fi
+}
+
 require_env() {
   local var_name="$1"
   if [ -z "${!var_name:-}" ]; then
@@ -26,7 +38,8 @@ require_env() {
 prepare_data_dirs() {
   log "Preparing persistent directories"
   mkdir -p "$APP_DATA_DIR/config" "$APP_DATA_DIR/storage" "$APP_DATA_DIR/logs" "$APP_RUNTIME_DIR" "$APP_HOME_DIR" "$AFFINE_HOME"
-  mkdir -p /run/nginx/body /run/nginx/proxy /run/nginx/fastcgi
+  mkdir -p /run/nginx/body /run/nginx/proxy /run/nginx/fastcgi /run/nginx/uwsgi /run/nginx/scgi
+  : > "$ENV_EXPORT_FILE"
 
   if [ ! -f "$APP_DATA_DIR/config/config.json" ]; then
     log "Seeding default configuration"
@@ -48,6 +61,46 @@ prepare_data_dirs() {
   chown -R cloudron:cloudron "$APP_DATA_DIR" "$APP_RUNTIME_DIR" "$APP_HOME_DIR"
 }
 
+prepare_manticore() {
+  log "Preparing Manticore data directory"
+  local buddy_plugins_dir="$MANTICORE_DATA_DIR/plugins/buddy-plugins"
+  mkdir -p "$MANTICORE_DATA_DIR"/{data,binlog,logs,buddy} "$buddy_plugins_dir"
+  cp "$APP_CODE_DIR/manticore/manticore.conf" "$MANTICORE_CONFIG_FILE"
+  local composer_file="$buddy_plugins_dir/composer.json"
+  if [ ! -f "$composer_file" ]; then
+    cat > "$composer_file" <<'JSON'
+{
+  "require": {},
+  "minimum-stability": "dev"
+}
+JSON
+  fi
+  local system_buddy_plugins="/usr/share/manticore/modules/manticore-buddy/buddy-plugins"
+  if [ ! -L "$system_buddy_plugins" ] && [ -w "/usr/share/manticore/modules/manticore-buddy" ]; then
+    rm -rf "$system_buddy_plugins"
+    ln -s "$buddy_plugins_dir" "$system_buddy_plugins"
+  elif [ ! -L "$system_buddy_plugins" ]; then
+    log "Buddy modules directory is read-only; skipping symlink to ${buddy_plugins_dir}"
+  fi
+  mkdir -p /run/manticore
+  chown -R cloudron:cloudron "$MANTICORE_DATA_DIR" /run/manticore
+  record_env_var MANTICORE_CONFIG_FILE "$MANTICORE_CONFIG_FILE"
+  record_env_var MANTICORE_HTTP_ENDPOINT "$MANTICORE_HTTP_ENDPOINT"
+}
+
+prepare_runtime_build_dir() {
+  local source_dir="$APP_BUILD_DIR"
+  local runtime_build_dir="$APP_RUNTIME_DIR/affine-build"
+  log "Syncing AFFiNE runtime into $runtime_build_dir"
+  rm -rf "$runtime_build_dir"
+  mkdir -p "$runtime_build_dir"
+  cp -a "$source_dir/." "$runtime_build_dir/"
+  chown -R cloudron:cloudron "$runtime_build_dir"
+  APP_BUILD_DIR="$runtime_build_dir"
+  export APP_BUILD_DIR
+  record_env_var APP_BUILD_DIR "$APP_BUILD_DIR"
+}
+
 configure_database() {
   require_env CLOUDRON_POSTGRESQL_URL
   local db_url="$CLOUDRON_POSTGRESQL_URL"
@@ -55,9 +108,27 @@ configure_database() {
     db_url="postgresql://${db_url#postgres://}"
   fi
   export DATABASE_URL="$db_url"
+  record_env_var DATABASE_URL "$db_url"
   log "Configured PostgreSQL endpoint"
 }
 
+ensure_pgvector_extension() {
+  if [ -z "${DATABASE_URL:-}" ]; then
+    log "DATABASE_URL not set; skipping pgvector extension check"
+    return
+  fi
+  if ! command -v psql >/dev/null 2>&1; then
+    log "psql client unavailable; cannot verify pgvector extension"
+    return
+  fi
+  log "Ensuring pgvector extension exists"
+  if psql "$DATABASE_URL" -v ON_ERROR_STOP=1 -c "CREATE EXTENSION IF NOT EXISTS vector;" >/dev/null 2>&1; then
+    log "pgvector extension ready"
+  else
+    log "WARNING: Failed to create pgvector extension automatically. Ensure it exists for AI embeddings."
+  fi
+}
+
 configure_redis() {
   require_env CLOUDRON_REDIS_URL
   local redis_info
@@ -65,18 +136,44 @@ configure_redis() {
 import os
 from urllib.parse import urlparse
 url = os.environ.get('CLOUDRON_REDIS_URL')
-if not url:
-    raise SystemExit('redis url missing')
-parsed = urlparse(url)
-host = parsed.hostname or 'localhost'
-port = parsed.port or 6379
-password = parsed.password or ''
-db = (parsed.path or '/0').lstrip('/') or '0'
-username = parsed.username or ''
+parsed = urlparse(url) if url else None
+host = os.environ.get('CLOUDRON_REDIS_HOST')
+port = os.environ.get('CLOUDRON_REDIS_PORT')
+password = os.environ.get('CLOUDRON_REDIS_PASSWORD')
+username = os.environ.get('CLOUDRON_REDIS_USERNAME')
+db = os.environ.get('CLOUDRON_REDIS_DB')
+if not host and parsed:
+    host = parsed.hostname or 'localhost'
+if not port and parsed:
+    port = parsed.port or 6379
+if not password and parsed:
+    password = parsed.password or ''
+if not db and parsed:
+    db = (parsed.path or '/0').lstrip('/') or '0'
+if username is None:
+    username = parsed.username if parsed and parsed.username else 'default'
+host = host or 'localhost'
+port = port or 6379
+password = password or ''
+db = db or '0'
 print(f"{host}\n{port}\n{password}\n{db}\n{username}")
 PY
 )
   IFS=$'\n' read -r host port password db username <<<"$redis_info"
+  if [ -n "${CLOUDRON_REDIS_HOST:-}" ]; then
+    host="$CLOUDRON_REDIS_HOST"
+  fi
+  if [ -n "${CLOUDRON_REDIS_PORT:-}" ]; then
+    port="$CLOUDRON_REDIS_PORT"
+  fi
+  if [ -n "${CLOUDRON_REDIS_PASSWORD:-}" ]; then
+    password="$CLOUDRON_REDIS_PASSWORD"
+  fi
+  if [ -n "${CLOUDRON_REDIS_USERNAME:-}" ]; then
+    username="$CLOUDRON_REDIS_USERNAME"
+  elif [ -z "$username" ]; then
+    username="default"
+  fi
   export REDIS_SERVER_HOST="$host"
   export REDIS_SERVER_PORT="$port"
   export REDIS_SERVER_PASSWORD="$password"
@@ -84,20 +181,79 @@ PY
   export REDIS_SERVER_USERNAME="$username"
   export REDIS_URL="$CLOUDRON_REDIS_URL"
   export REDIS_SERVER_URL="$CLOUDRON_REDIS_URL"
+  record_env_var REDIS_SERVER_HOST "$host"
+  record_env_var REDIS_SERVER_PORT "$port"
+  record_env_var REDIS_SERVER_PASSWORD "$password"
+  record_env_var REDIS_SERVER_DATABASE "$db"
+  record_env_var REDIS_SERVER_USERNAME "$username"
+  record_env_var REDIS_URL "$CLOUDRON_REDIS_URL"
+  record_env_var REDIS_SERVER_URL "$CLOUDRON_REDIS_URL"
+  python3 - <<'PY'
+import json
+import os
+from pathlib import Path
+config_path = Path(os.environ['APP_DATA_DIR']) / 'config' / 'config.json'
+data = json.loads(config_path.read_text())
+redis = data.setdefault('redis', {})
+redis['host'] = os.environ.get('REDIS_SERVER_HOST', '')
+redis['port'] = int(os.environ.get('REDIS_SERVER_PORT') or 6379)
+redis['password'] = os.environ.get('REDIS_SERVER_PASSWORD', '')
+redis['username'] = os.environ.get('REDIS_SERVER_USERNAME', '')
+redis['db'] = int(os.environ.get('REDIS_SERVER_DATABASE') or 0)
+config_path.write_text(json.dumps(data, indent=2))
+PY
   log "Configured Redis endpoint"
 }
 
 configure_mail() {
-  if [ -z "${CLOUDRON_MAIL_SMTP_SERVER:-}" ]; then
-    log "Cloudron mail addon not configured, skipping SMTP setup"
+  local host=""
+  local port=""
+  local user=""
+  local password=""
+  local sender=""
+  local ignore_tls="false"
+
+  if [ -n "${CLOUDRON_EMAIL_SMTP_SERVER:-}" ]; then
+    host="$CLOUDRON_EMAIL_SMTP_SERVER"
+    port="${CLOUDRON_EMAIL_SMTPS_PORT:-${CLOUDRON_EMAIL_SMTP_PORT:-587}}"
+    user="${CLOUDRON_EMAIL_SMTP_USERNAME:-}"
+    password="${CLOUDRON_EMAIL_SMTP_PASSWORD:-}"
+    sender="${CLOUDRON_EMAIL_FROM:-AFFiNE <no-reply@cloudron.local>}"
+    ignore_tls="${MAILER_IGNORE_TLS:-true}"
+    log "Configuring SMTP using Cloudron email addon"
+  elif [ -n "${CLOUDRON_MAIL_SMTP_SERVER:-}" ]; then
+    host="$CLOUDRON_MAIL_SMTP_SERVER"
+    port="${CLOUDRON_MAIL_SMTP_PORT:-587}"
+    user="${CLOUDRON_MAIL_SMTP_USERNAME:-}"
+    password="${CLOUDRON_MAIL_SMTP_PASSWORD:-}"
+    sender="${CLOUDRON_MAIL_FROM:-AFFiNE <no-reply@cloudron.local>}"
+    ignore_tls="${MAILER_IGNORE_TLS:-false}"
+    if [ -n "${CLOUDRON_MAIL_SMTP_SECURE:-}" ]; then
+      case "${CLOUDRON_MAIL_SMTP_SECURE,,}" in
+        true|1|yes) port="${CLOUDRON_MAIL_SMTP_PORT:-465}" ;;
+      esac
+    fi
+    log "Configuring SMTP using Cloudron sendmail addon"
+  else
+    log "Cloudron mail/email addon not configured, skipping SMTP setup"
     return
   fi
-  export MAILER_HOST="$CLOUDRON_MAIL_SMTP_SERVER"
-  export MAILER_PORT="${CLOUDRON_MAIL_SMTP_PORT:-587}"
-  export MAILER_USER="${CLOUDRON_MAIL_SMTP_USERNAME:-}"
-  export MAILER_PASSWORD="${CLOUDRON_MAIL_SMTP_PASSWORD:-}"
-  export MAILER_SENDER="${CLOUDRON_MAIL_FROM:-AFFiNE <no-reply@cloudron.local>}"
+
+  export MAILER_HOST="$host"
+  export MAILER_PORT="$port"
+  export MAILER_USER="$user"
+  export MAILER_PASSWORD="$password"
+  export MAILER_SENDER="${sender:-AFFiNE <no-reply@cloudron.local>}"
   export MAILER_SERVERNAME="${MAILER_SERVERNAME:-AFFiNE Server}"
+  export MAILER_IGNORE_TLS="$ignore_tls"
+
+  record_env_var MAILER_HOST "$MAILER_HOST"
+  record_env_var MAILER_PORT "$MAILER_PORT"
+  record_env_var MAILER_USER "$MAILER_USER"
+  record_env_var MAILER_PASSWORD "$MAILER_PASSWORD"
+  record_env_var MAILER_SENDER "$MAILER_SENDER"
+  record_env_var MAILER_SERVERNAME "$MAILER_SERVERNAME"
+  record_env_var MAILER_IGNORE_TLS "$MAILER_IGNORE_TLS"
   log "Configured SMTP relay"
 }
 
@@ -120,38 +276,32 @@ PY
       export AFFINE_SERVER_HTTPS=false
     fi
   fi
-  export AFFINE_INDEXER_ENABLED=${AFFINE_INDEXER_ENABLED:-false}
+  record_env_var AFFINE_SERVER_EXTERNAL_URL "${AFFINE_SERVER_EXTERNAL_URL:-}"
+  record_env_var AFFINE_SERVER_HOST "${AFFINE_SERVER_HOST:-}"
+  record_env_var AFFINE_SERVER_HTTPS "${AFFINE_SERVER_HTTPS:-}"
 }
 
-write_runtime_env() {
-  : > "$ENV_EXPORT_FILE"
-  local vars=(
-    DATABASE_URL
-    REDIS_SERVER_HOST
-    REDIS_SERVER_PORT
-    REDIS_SERVER_PASSWORD
-    REDIS_SERVER_DATABASE
-    REDIS_SERVER_USERNAME
-    REDIS_URL
-    REDIS_SERVER_URL
-    MAILER_HOST
-    MAILER_PORT
-    MAILER_USER
-    MAILER_PASSWORD
-    MAILER_SENDER
-    MAILER_SERVERNAME
-    AFFINE_SERVER_EXTERNAL_URL
-    AFFINE_SERVER_HOST
-    AFFINE_SERVER_HTTPS
-    AFFINE_INDEXER_ENABLED
-  )
-  local var value
-  for var in "${vars[@]}"; do
-    value="${!var-}"
-    if [ -n "$value" ]; then
-      printf '%s=%q\n' "$var" "$value" >> "$ENV_EXPORT_FILE"
-    fi
-  done
+configure_indexer() {
+  export AFFINE_INDEXER_ENABLED=true
+  export AFFINE_INDEXER_SEARCH_PROVIDER=${AFFINE_INDEXER_SEARCH_PROVIDER:-manticoresearch}
+  export AFFINE_INDEXER_SEARCH_ENDPOINT=${AFFINE_INDEXER_SEARCH_ENDPOINT:-$MANTICORE_HTTP_ENDPOINT}
+  record_env_var AFFINE_INDEXER_ENABLED "$AFFINE_INDEXER_ENABLED"
+  record_env_var AFFINE_INDEXER_SEARCH_PROVIDER "$AFFINE_INDEXER_SEARCH_PROVIDER"
+  record_env_var AFFINE_INDEXER_SEARCH_ENDPOINT "$AFFINE_INDEXER_SEARCH_ENDPOINT"
+
+  python3 - <<'PY'
+import json
+import os
+from pathlib import Path
+config_path = Path(os.environ['APP_DATA_DIR']) / 'config' / 'config.json'
+data = json.loads(config_path.read_text())
+indexer = data.setdefault('indexer', {})
+indexer['enabled'] = True
+indexer['provider.type'] = os.environ.get('AFFINE_INDEXER_SEARCH_PROVIDER', 'manticoresearch')
+indexer['provider.endpoint'] = os.environ.get('AFFINE_INDEXER_SEARCH_ENDPOINT', 'http://127.0.0.1:9308')
+config_path.write_text(json.dumps(data, indent=2))
+PY
+  log "Configured indexer endpoint"
 }
 
 configure_auth() {
@@ -160,6 +310,7 @@ configure_auth() {
     python3 - <<'PY'
 import json
 import os
+import re
 from pathlib import Path
 config_path = Path(os.environ['APP_DATA_DIR']) / 'config' / 'config.json'
 data = json.loads(config_path.read_text())
@@ -168,9 +319,34 @@ providers = auth.setdefault('providers', {})
 oidc = providers.setdefault('oidc', {})
 oidc['clientId'] = os.environ.get('CLOUDRON_OIDC_CLIENT_ID', '')
 oidc['clientSecret'] = os.environ.get('CLOUDRON_OIDC_CLIENT_SECRET', '')
-oidc['issuer'] = os.environ.get('CLOUDRON_OIDC_ISSUER') or os.environ.get('CLOUDRON_OIDC_DISCOVERY_URL', '')
+issuer = os.environ.get('CLOUDRON_OIDC_ISSUER') or ''
+discovery = os.environ.get('CLOUDRON_OIDC_DISCOVERY_URL') or ''
+resolved_issuer = issuer
+if not resolved_issuer and discovery:
+    resolved_issuer = re.sub(r'/\.well-known.*$', '', discovery)
+if not resolved_issuer:
+    resolved_issuer = discovery
+oidc['issuer'] = resolved_issuer
+default_scope = os.environ.get('AFFINE_OIDC_SCOPE', 'openid profile email')
+default_claims = {
+    'claim_id': os.environ.get('AFFINE_OIDC_CLAIM_ID', 'preferred_username'),
+    'claim_email': os.environ.get('AFFINE_OIDC_CLAIM_EMAIL', 'email'),
+    'claim_name': os.environ.get('AFFINE_OIDC_CLAIM_NAME', 'name'),
+}
 args = oidc.setdefault('args', {})
-args.setdefault('scope', 'openid profile email')
+args['scope'] = default_scope
+for key, value in default_claims.items():
+    args.setdefault(key, value)
+oauth = data.setdefault('oauth', {})
+oauth_providers = oauth.setdefault('providers', {})
+oauth_oidc = oauth_providers.setdefault('oidc', {})
+oauth_oidc['clientId'] = oidc['clientId']
+oauth_oidc['clientSecret'] = oidc['clientSecret']
+oauth_oidc['issuer'] = resolved_issuer
+oauth_args = oauth_oidc.setdefault('args', {})
+oauth_args['scope'] = default_scope
+for key, value in default_claims.items():
+    oauth_args.setdefault(key, value)
 config_path.write_text(json.dumps(data, indent=2))
 PY
     log "Enabled Cloudron OIDC for AFFiNE"
@@ -199,13 +375,16 @@ PY
 main() {
   export HOME="$APP_HOME_DIR"
   prepare_data_dirs
+  prepare_manticore
+  prepare_runtime_build_dir
   configure_database
+  ensure_pgvector_extension
   configure_redis
   configure_mail
   configure_server_metadata
+  configure_indexer
   update_server_config
   configure_auth
-  write_runtime_env
   chown -R cloudron:cloudron "$APP_DATA_DIR" "$APP_HOME_DIR"
   log "Starting supervisor"
   exec /usr/bin/supervisord -c "$APP_CODE_DIR/supervisord.conf"

supervisord.conf

@@ -1,7 +1,12 @@
+[unix_http_server]
+file=/run/supervisor.sock
+chmod=0700
+chown=root:root
+
 [supervisord]
 nodaemon=true
 user=root
-logfile=/dev/null
+logfile=/run/supervisord.log
 pidfile=/run/supervisord.pid
 
 [program:nginx]
@@ -15,6 +20,25 @@ stderr_logfile=/dev/stderr
 stderr_logfile_maxbytes=0
 stopsignal=QUIT
 
+[program:manticore]
+command=/app/code/run-manticore.sh
+autostart=true
+autorestart=true
+startsecs=5
+priority=12
+user=cloudron
+stdout_logfile=/dev/stdout
+stdout_logfile_maxbytes=0
+stderr_logfile=/dev/stderr
+stderr_logfile_maxbytes=0
+stopsignal=TERM
+
+[supervisorctl]
+serverurl=unix:///run/supervisor.sock
+
+[rpcinterface:supervisor]
+supervisor.rpcinterface_factory = supervisor.rpcinterface:make_main_rpcinterface
+
 [program:affine]
 command=/app/code/run-affine.sh
 autostart=true

tmp_data/config/config.json

@@ -2,5 +2,38 @@
   "$schema": "https://github.com/toeverything/AFFiNE/releases/latest/download/config.schema.json",
   "server": {
     "name": "AFFiNE Self Hosted Server"
+  },
+  "copilot": {
+    "enabled": true,
+    "scenarios": {
+      "override_enabled": true,
+      "scenarios": {
+        "audio_transcribing": "gemini-2.5-flash",
+        "chat": "gemini-2.5-flash",
+        "embedding": "gemini-embedding-001",
+        "image": "gpt-image-1",
+        "rerank": "gpt-4.1",
+        "coding": "claude-sonnet-4-5@20250929",
+        "complex_text_generation": "gpt-4o-2024-08-06",
+        "quick_decision_making": "gpt-5-mini",
+        "quick_text_generation": "gemini-2.5-flash",
+        "polish_and_summarize": "gemini-2.5-flash"
+      }
+    },
+    "providers.openai": {
+      "apiKey": "sk-provide-openai-key-here",
+      "baseURL": "https://api.openai.com/v1"
+    },
+    "providers.anthropic": {
+      "apiKey": "sk-ant-provide-anthropic-key-here",
+      "baseURL": "https://api.anthropic.com/v1"
+    },
+    "providers.gemini": {
+      "apiKey": "provide-gemini-key-here",
+      "baseURL": "https://generativelanguage.googleapis.com/v1beta"
+    },
+    "exa": {
+      "key": "provide-exa-key-or-leave-empty"
+    }
   }
 }